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Baird, AH; Sommer, B; Madin, J (2012) Pole-ward range expansion of Acropora spp. along the east coast of Australia. Coral Reefs, 31 4): 1063-1063.

Ban, NC; Pressey, RL; Weeks, S (2012) Conservation objectives and sea-surface temperature anomalies in the Great Barrier Reef. Conservation Biology, 26(5): 799-809.

Banwell, MG; Coster, MJ; Hungerford, NL; Garson, MJ; Su, S; Kotze, AC; Munro, MHG (2012) 3,4 '-Linked bis (piperidines) related to the haliclonacyclamine class of marine alkaloids: synthesis using crossed-aldol chemistry and preliminary biological evaluations. Organic & Biomolecular Chemistry, 10 (1):154-161.

Bellantuono, AJ; Granados-Cifuentes, C; Miller, DJ; Hoegh-Guldberg, O; Rodriguez-Lanetty, M (2012) Coral thermal tolerance: Tuning gene expression to resist thermal stress. PLOS One, 7 (11): 10.1371

Bellantuono, AJ; Hoegh-Guldberg, O; Rodriguez-Lanetty, M.(2012) Resistance to thermal stress in corals without changes in symbiont composition. Proceedings of the Royal Society B-Biological Sciences, 279 (1731):1100-1107.

Bender, D; Diaz-Pulido, G; Dove, S (2012) Effects of macroalgae on corals recovering from disturbance. Journal of Experimental Marine Biology and Ecology, 429: 15-19.

Blackwood, JC; Hastings, A; Mumby, PJ (2012) The effect of fishing on hysteresis in Caribbean coral reefs. Theoretical Ecology, 5(1): 105-114.

Bode, M; Connolly, SR; Pandolfi, JM (2012) Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist, 180 (5): 577-588.

Bray, RA; Cribb, TH; Littlewood, DTJ (2012) Sasala nolani gen. n; sp n. (Digenea: Aporocotylidae) from the body-cavity of the guineafowl puffer fish Arothron meleagris (Lacepede) (Tetraodontiformes: Tetraodontidae) from off Moorea, French Polynesia. Zootaxa, (3334): 29-41.

Bridge, TCL; Fabricius, KE; Bongaerts, P; Wallace, CC; Muir, PR; Done, TJ; Webster, JM (2012) Diversity of Scleractinia and Octocorallia in the mesophotic zone of the Great Barrier Reef, Australia. Coral Reefs, 31 (1): 179-189.

Bromfield, K; Pandolfi, JM (2012) Regional patterns of evolutionary turnover in Neogene coral reefs from the central Indo-West Pacific Ocean. Evolutionary Ecology, 26 (2): 375-391.

Brown, CJ; Fulton, EA; Possingham, HP; Richardson, AJ (2012) How long can fisheries management delay action in response to ecosystem and climate change? Ecological Applications, 22(1): 298-310.

Budd, AF; Nunes, FLD; Weil, E; Pandolfi, JM (2012) Polymorphism in a common Atlantic reef coral (Montastraea cavernosa) and its long-term evolutionary implications. Evolutionary Ecology, 26 (2):265-290.
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Burgess, EA; Lanyon, JM; Keeley, T (2012) Testosterone and tusks: maturation and seasonal reproductive patterns of live, free-ranging male dugongs (Dugong dugon) in a subtropical population. Reproduction, 143 (5): 683-697.

Burgess, SC; Treml, EA; Marshall, DJ (2012). How do dispersal costs and habitat selection influence realized population connectivity? Ecology, 93 (6): 178-1387.

Burley, JG; McAllister, RRJ; Collins, KA; Lovelock, CE (2012) Integration, synthesis and climate change adaptation: a narrative based on coastal wetlands at the regional scale. Regional Environmental Change, 12(3): 581-593.

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Bustamante, C; Flores, H; Concha-Perez, Y; Vargas-Caro, C; Lamilla, J; Bennett, M (2012) First record of Hydrolagus melanophasma James, Ebert, Long & Didier, 2009 (Chondrichthyes, Chimaeriformes, Holocephali) from the southeastern Pacific Ocean. Latin American Journal of Aquatic Research, 40 (1): 236-242.

Bustamante, C; Lamilla, J; Concha, F; Ebert, DA; Bennett, MB (2012) Morphological characters of the thickbody skate Amblyraja frerichsi (Krefft 1968) (Rajiformes: Rajidae), with notes on its biology. PLOS One, 7 (6):10.1371.

Bustamante, C; Vargas-Caro, C; Oddone, MC; Concha, F; Flores, H; Lamilla, J; Bennett, MB (2012) Reproductive biology of Zearaja chilensis (Chondrichthyes: Rajidae) in the south-east Pacific Ocean. Journal of Fish Biology, 80(5): 1213-1226.

Chiou, TH; Place, AR; Caldwell, RL; Marshall, NJ; Cronin, TW (2012) A novel function for a carotenoid: astaxanthin used as a polarizer for visual signalling in a mantis shrimp. Journal of Experimental Biology, 215(4): 584-589.

Chollett, I; Muller-Karger, FE; Heron, SF; Skirving, W; Mumby, PJ (2012) Seasonal and spatial heterogeneity of recent sea surface temperature trends in the Caribbean Sea and southeast Gulf of Mexico. Marine Pollution Bulletin, 65 (5): 956-965.

Chollett, IMumby, PJ (2012) Predicting the distribution of Montastraea reefs using wave exposure. Coral Reefs, 31(2): 493-503.

Clark, TR; Zhao, JX; Feng, YX; Done, TJ; Jupiter, S; Lough, J; Pandolfi, JM (2012) Spatial variability of initial (230)Th/(232)Th in modern Porites from the inshore region of the Great Barrier Reef. Geochimica et Cosmochimica Acta, 78 99-118.

Conaco, C; Bassett, DS; Zhou, HJ; Arcila, ML; Degnan, SM; Degnan, BM; Kosik, KS (2012) Functionalization of a protosynaptic gene expression network. Proceedings of the National Academy of Sciences of the United States of America, 109: 10612-10618.

Conaco, C; Neveu, P; Zhou, HJ; Arcila, ML; Degnan, SM; Degnan, BM; Kosik, KS (2012) Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions. BMC Genomics, 13 10.1186.

Copeland, A; Gu, W; Yasawong, M; Lapidus, A; Lucas, S; Deshpande, S; Pagani, I; Tapia, R; Cheng, JF; Goodwin, LA; Pitluck, S; Liolios, K; Ivanova, N; Mavromatis, K; Mikhailova, N; Pati, A; Chen, A; Palaniappan, K; Land, M; Pan, C; Brambilla, EM; Rohde, M; Tindall, BJ; Sikorski, J; Goker, M; Detter, JC; Bristow, J; Eisen, JA; Markowitz, V; Hugenholtz, P; Kyrpides, NC; Klenk, HP; Woyke, T. (2012) Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences, 6 (1): 21-30.

Couturier, LIE; Marshall, AD; Jaine, FRA; Kashiwagi, T; Pierce, SJ; Townsend, KA; Weeks, SJ; Bennett, MB; Richardson, AJ (2012) Biology, ecology and conservation of the Mobulidae. Journal of Fish Biology, 80 (5): 1075-1119.

Dang, C., Tan, T; Moffit, D; Deboutteville, J. D; Barnes, AC (2012) Gender differences in hemocyte immune parameters of bivalves: The Sydney rock oyster Saccostrea glomerata and the pearl oyster Pinctada fucata. Fish and Shellfish Immunology, 33 (1): 138-142.

Deng, L; Gregory, A; Yilmaz, S; Poulos, BT; Hugenholtz, P; Sullivan, MB (2012) Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging. MBIO, 3 (6): 10.1128.

Dixon, OA; Jell, JS (2012) Heliolitine tabulate corals from Late Ordovician and possibly early Silurian allochthonous limestones in the Broken River Province, Queensland, Australia. Alcheringa, 36(1): 69-98.

Doropoulos, C; Ward, S; Diaz-Pulido, G; Hoegh-Guldberg, O; Mumby, PJ (2012) Ocean acidification reduces coral recruitment by disrupting intimate larval-algal settlement interactions. Ecology Letters, 15: 338-346.

Doropoulos, CWard, S; Marshell, A; Diaz-Pulido, G; Mumby, PJ (2012) Interactions among chronic and acute impacts on coral recruits: the importance of size-escape thresholds. Ecology, 93(10): 2131-2138.

Dudgeon, CL; Blower, DC; Broderick, D; Giles, JL; Holmes, BJ; Kashiwagi, T; Krück, NC; Morgan JAT; Tillett, BJ; Ovenden, JR (2012) A review of the application of molecular genetics for fisheries management and conservation of sharks and rays. Journal of Fish Biology, 80: 1789-1843.

Dudgeon, CL; White, WT (2012) First record of potential Batesian mimicry in an elasmobranch: juvenile zebra sharks mimic banded sea snakes? Marine and Freshwater Research, 63 (6): 545-551.

Dunn, SR; Pernice, M; Green, K; Hoegh-Guldberg, O; Dove, SG (2012) Thermal stress promotes host mitochondrial degradation in symbiotic Cnidarians: Are the batteries of the Reef going to run out? PLOS One, 7 (7): 10.1371.

Dunn, SR; Thomas, MC; Nette, GW; Dove, SG (2012) A lipidomic approach to understanding free fatty acid lipogenesis derived from dissolved inorganic carbon within Cnidarian-Dinoflagellate symbiosis. PLOS One, 7(10): 10.1371.

Dutertre, S; Jin, AH; Alewood, PF; Lewis, RJ (2012) The Venom of Conus geographus revisited. Toxicon, 60 (2): 145-145.

Eigeland, KA; Lanyon, JM; Trott, DJ; Ouwerkerk, D; Blanshard, W; Milinovich, GJ; Gulino, L. M; Martinez, E; Merson, S; Klieve, AV (2012) Bacterial community structure in the hindgut of wild and captive dugongs (Dugong dugon). Aquatic Mammals, 38 (4): 402-411.

Erpenbeck, D; Schmitz, J; Churakov, G; Huchon, D; Worheide, G; Degnan, BM (2012) First evidence of miniature transposable elements in sponges (Porifera). Hydrobiologia, 687 (1): 43-47.

Farquharson C; Smit N. J; Grutter A. S., Davies A. J. (2012) Gnathia masca sp. nov. (Crustacea, Isopoda, Gnathiidae) from Lizard Island, Great Barrier Reef, Australia. Zootaxa. 3233: 22–36

Fahey, B; Degnan B. (2012) Origin and evolution of laminin gene family diversity. Molecular Biology and Evolution, 29 (7): 1823-1836.

Ferrari, R; Gonzalez-Rivero, M., Mumby, PJ (2012) Size matters in competition between corals and macroalgae. Marine Ecology-Progress Series, 467: 77-88.

Ferrari, R., Gonzalez-Rivero, M; Ortiz, JC; Mumby, PJ (2012) Interaction of herbivory and seasonality on the dynamics of Caribbean macroalgae. Coral Reefs, 31 (3): 683-692.

Fisher, PL; Malme, MK; Dove, S (2012) The effect of temperature stress on coral-Symbiodinium associations containing distinct symbiont types. Coral Reefs, 31 (2): 473-485.

Flynn, BA; Richardson, AJ; Brierley, AS; Boyer, DC; Axelsen, BE; Scott, L; Moroff, NE;  Kainge, PI; Tjizoo, BM; Gibbons MJ (2012) Temporal and spatial patterns in the abundance of jellyfish in the northern Benguela upwelling ecosystem and their link to thwarted pelagic fishery recovery. African Journal of Marine Science, 34 (1): 131-146.

Foster, NL; Paris, CB; Kool, JT; Baums, IB; Stevens, JR; Sanchez, JA; Bastidas, C; Agudelo, C; Bush, P; Day, O; Ferrari, R; Gonzalez, P; Gore, S; Guppy, R; McCartney, MA; McCoy, C; Mendes, J; Srinivasan, A; Steiner, S; Vermeij, MJA; Weil, E; Mumby, PJ (2012) Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow. Molecular Ecology, 21(5): 1143-1157.

Fritsches, KA (2012) Australian Loggerhead sea turtle hatchlings do not avoid yellow. Marine and Freshwater Behaviour and Physiology, 45 (2): 79-89.

Fry, BG; Ruder, T; Georgieva, DN; Morgenstern, D; King, G; Undheim, EAB (2012) Tentacles of venom: molecular evolution of coleoid venoms. Toxicon, 60 (2): 125.

Garland, EC; Lilley, MS; Goldizen, AW; Rekdahl, ML; Garrigue, C; Noad, MJ (2012) Improved versions of the Levenshtein distance method for comparing sequence information in animals' vocalisations: tests using humpback whale song. Behaviour, 149 (13-14): 1413-1441.

Gilby, BL; Burfeind, DD; Tibbetts, IR (2012) Better red than dead? Potential aposematism in a harpacticoid copepod, Metis holothuriae. Marine Environmental Research, 74: 73-76.

Gonzalez-Rivero, M; Ferrari, R; Schonberg, CHL; Mumby, PJ (2012) Impacts of macroalgal competition and parrotfish predation on the growth of a common bioeroding sponge. Marine Ecology-Progress Series, 444: 133-U146.

Grutter, AS (2012) Enhanced colonization success and competition associated with conspecifics in cleaner fish Labroides dimidiatus juveniles. Coral Reefs, 31 (4): 1169-1176.

Harborne, AR (2012) Seasonal variation in the functional response of a coral-reef piscivore alters the inverse density-dependent mortality of its prey. Coral Reefs, 31 (1): 247-251.

Harborne, AR; Mumby, PJ; Ferrari, R (2012) The effectiveness of different meso-scale rugosity metrics for predicting intra-habitat variation in coral-reef fish assemblages. Environmental Biology of Fishes, 94 (2): 431-442.

Harnik, PG; Lotze, HK; Anderson, SC; Finkel, ZV; Finnegan, S; Lindberg, DR; Liow, LH; Lockwood, R; McClain, CR; McGuire, JL; O'Dea, A; Pandolfi, JM; Simpson, C; Tittensor, DP (2012) Extinctions in ancient and modern seas. Trends in Ecology & Evolution, 27 (11): 608-617.

Hedley, JD; Roelfsema, CM; Phinn, SR; Mumby, PJ (2012) Environmental and sensor limitations in optical remote sensing of coral reefs: Implications for monitoring and sensor design. Remote Sensing, 4 (1): 271-302.

Hentschel, U; Piel, J; Degnan, SM; Taylor, MW (2012) Genomic insights into the marine sponge microbiome. Nature Reviews Microbiology, 10 (9): 641-U75.

Hoegh-Guldberg, O
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Hofmann, CM; Marshall, NJ; Abdilleh, K; Patel, Z; Siebeck, UE; Carleton, KL. (2012) Opsin evolution in damselfish: Convergence, reversal, and parallel evolution across tuning sites. Journal of Molecular Evolution, 75 (304):79-91.

Holmes, BJNeil, DT (2012) "Gift Giving" by wild Bottlenose dolphins (Tursiops sp.) to humans at a wild dolphin provisioning program, Tangalooma, Australia. Anthrozoos, 25 (4): 397-413.

Holmes, BJ; Sumpton, WD; Mayer, DG; Tibbetts, IR; Neil, DT; Bennett, MB (2012) Declining trends in annual catch rates of the tiger shark (Galeocerdo cuvier) in Queensland, Australia. Fisheries Research, 129: 38-45.

How, MJ; Pignatelli, V; Temple, SE; Marshall, NJ; Hemmi, JM. (2012) High e-vector acuity in the polarisation vision system of the fiddler crab Uca vomeris. Journal of Experimental Biology, 215 (12): 2128-2134

Huelsken, T; Tapken, D; Dahlmann, T; Wagele, H; Riginos, C; Hollmann, M. (2012) Systematics and phylogenetic species delimitation within Polinices s.l. (Caenogastropoda: Naticidae) based on molecular data and shell morphology. Organisms Diversity & Evolution, 12 (4):349-375.

Hunter, JA; Cribb, TH (2012) A cryptic complex of species related to Transversotrema licinum Manter, 1970 from fishes of the Indo-West Pacific, including descriptions of ten new species of Transversotrema Witenberg, 1944 (Digenea: Transversotrematidae). Zootaxa, 3176:1-44.

Hunter, JA; Hall, KA; Cribb, TH (2012) A complex of Transversotrematidae (Platyhelminthes: Digenea) associated with mullid fishes of the Indo-West Pacific Region, including the descriptions of four new species of Transversotrema. Zootaxa, (3266):1-22.

Huu, HD; Tabrett, S; Hoffmann, K; Koppel, P; Lucas, JS; Barnes, AC (2012) Dietary nucleotides are semi-essential nutrients for optimal growth of black tiger shrimp (Penaeus monodon). Aquaculture, 366 115-121.

Jackson, DJ; Degnan, SM; Degnan, BM (2012) Variation in rates of early development in Haliotis asinina generate competent larvae of different ages. Frontiers in Zoology, 9 10.1186.

Jacobsen, IP; Bennett, MB (2012) Feeding ecology and dietary comparisons among three sympatric Neotrygon (Myliobatoidei: Dasyatidae) species. Journal of Fish Biology, 80(5): 1580-1594.

Jaine F; Couturier L; Weeks S; Townsend K; Bennett M; Fiora, K; Richardson, A (2012) When giants turn up: sighting trends, environmental influences and habitat use of the Manta Ray Manta alfredi at a Coral Reef. PLoS ONE 7(10): e46170. doi:10.1371/journal.pone.0046170 

Jin, AH; Dutertre, S; Kaas, Q; Lewis, RJ; Alewood, PF (2012) Transcriptomic and peptidomic characterisation of the Conus marmoreus venom: Insights on conopeptide diversity and venomic processing. Toxicon, 60 (2):144-145.

Kamal, M; Phinn, S (2012) Hyperspectral data for mangrove species mapping: A comparison of pixel-based and object-based approach. Remote Sensing, 3 (10): 2222-2242.

Kaniewska, P; Campbell, PR; Kline, DI; Rodriguez-Lanetty, M; Miller, DJ; Dove, S; Hoegh-Guldberg, O (2012) Major cellular and physiological impacts of ocean acidification on a reef building coral. PLOS One, 7 (4): 10.1371.

Kanishka, DBU; Sanders, KL; Fry, BG (2012) Hydrophis donaldi (Elapidae, Hydrophiinae), a highly distinctive new species of sea snake from northern Australia. Zootaxa 3201: 45-57.

Kashiwagi, T; Broderick, D; Lance, SL; Bennett, MB; Ovenden, JR (2012) Development and characterization of ten microsatellite loci for the reef manta ray Manta alfredi. Conservation Genetics Resources, 4 (4):1055-1058.

Kashiwagi, T; Marshall, AD; Bennett, MB; Ovenden, JR (2012) The genetic signature of recent speciation in manta rays (Manta alfredi and M. birostris). Molecular Phylogenetics and Evolution, 64 (1): 212-218.

Kiessling, W; Simpson, C; Beck, B; Mewis, H; Pandolfi, J. M. (2012) Equatorial decline of reef corals during the last Pleistocene interglacial. Proceedings of the National Academy of Sciences of the United States of America, 109 (52): 21378-21383.

Klein, CJ
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Kline, D.I; Teneva, L; Schneider, K; Miard, T; Chai, A; Marker, M; Headley, K; Opdyke, B; Nash, M; Valetich, M; Caves, JK; Russell, BD; Connell, SD; Kirkwood, BJ; Brewer, P; Peltzer, E;  Silverman, J; Caldeira, K; Dunbar, RB; Koseff, JR; Monismith, SG; Mitchell, BG; Dove, S; Hoegh-Guldberg, O (2012) A short-term in situ CO2 enrichment experiment on Heron Island (GBR). Scientific Reports,  2 10.1038/srep00413.
Knight, J; Griffin, L; Dale, P; Phinn, S. (2012) Oviposition and larval habitat preferences of the saltwater mosquito, Aedes vigilax, in a subtropical mangrove forest in Queensland, Australia. Journal of Insect Science, 12: 6.

Kongjandtre, N; Ridgway, T; Cook, LG; Huelsken, T; Budd, AF; Hoegh-Guldberg, O (2012) Taxonomy and species boundaries in the coral genus Favia Milne Edwards and Haime, 1857 (Cnidaria: Scleractinia) from Thailand revealed by morphological and genetic data. Coral Reefs, 31 (2): 581-601.

Kuanpradit, C, Stewart, MJ; York, PS; Degnan, BM; Sobhon, P; Hanna, PJ; Chavadej, J; Cummins, SF (2012) Characterization of mucus-associated proteins from abalone (Haliotis) - candidates for chemical signalling. FEBS Journal, 279(3): 437-450.

Kvennefors, ECE; Sampayo, E; Kerr, C; Vieira, G; Roff, G; Barnes, AC (2012) Regulation of bacterial communities through antimicrobial activity by the coral holobiont. Microbial Ecology, 63 (3):605-618.

Lanyon, JM; Sneath, HL; Long, T (2012) Evaluation of exertion and capture stress in serum of wild dugongs (Dugong dugon). Journal of Zoo and Wildlife Medicine, 43(1):20-32.

Larkum, AWD; Ross, IL; Kruse, O; Hankamer, B (2012) Selection, breeding and engineering of microalgae for bioenergy and biofuel production. Trends In Biotechnology, 30(4): 198-205.

Leiper, I; Phinn, S; Dekker, AG (2012) Spectral reflectance of coral reef benthos and substrate assemblages on Heron Reef, Australia. International Journal of Remote Sensing, 33(12): 3946-3965.

Lester, RJG (2012) Overdispersion in marine fish parasites. Journal of Parasitology 98 (4): 718-721.

Lewis, RJ (2012) Discovery and development of the chi-conopeptide class of analgesic peptides. Toxicon, 59(4): 524-528.
Lewis, RJ; Dutertre, S; Vetter, I; Christie, MJ (2012) Conus venom peptide pharmacology. Pharmacological Reviews, 64(2): 259-298.

Licht, M; Schmuecker, K; Huelsken, T; Hanel, R; Bartsch, P; Paeckert, M (2012) Contribution to the molecular phylogenetic analysis of extant holocephalan fishes (Holocephali, Chimaeriformes). Organisms Diversity & Evolution, 12 (4):421-432.

Lloyd, P; Plaganyi, ÉE; Weeks, SJ; Magno-Canto, MPlaganyi, G (2012) Ocean warming alters species abundance patterns and increases species diversity in an African sub-tropical reef-fish community. Fisheries Oceanography 21: 78-94.

Lyons, MB; Phinn, SR; Roelfsema, CM (2012) Long term land cover and seagrass mapping using Landsat and object-based image analysis from 1972 to 2010 in the coastal environment of South East Queensland, Australia. ISPRS Journal of Photogrammetry and Remote Sensing, 71: 34-46.

MacKellar, MC; McGowan, HA; Phinn, SR (2012) Spatial heterogeneity of air-sea energy fluxes over a coral reef-Heron Reef, Australia. Journal of Applied Meteorology and Climatology, 51 (7): 1353-1370.

Marshall, NJ; Kleine, DA; Dean, AJ (2012) CoralWatch: education, monitoring, and sustainability through citizen science. Frontiers in Ecology and the Environment, 10 (6): 332-334.

Marshell, A; Mumby, PJ (2012) Revisiting the functional roles of the surgeonfish Acanthurus nigrofuscus and Ctenochaetus striatus. Coral Reefs, 31 (4): 1093-1101.

Maulany, RI; Booth, DT; Baxter, GS (2012) The effect of incubation temperature on hatchling quality in the olive ridley turtle, Lepidochelys olivacea, from Alas Purwo National Park, East Java, Indonesia: implications for hatchery management. Marine Biology, 159 (12):2651-2661.

McClanahan, TR; Donner, SD; Maynard, JA; MacNeil, MA; Graham, NAJ; Maina, J; Baker, AC; Alemu, IJB; Beger, M; Campbell, SJ; Darling, ES; Eakin, CM; Heron, SF; Jupiter, SD; Lundquist, CJ; McLeod, E; Mumby, PJ; Paddack, MJ; Selig, ER; van Woesik, R (2012) Prioritizing key resilience indicators to support coral reef management in a changing climate. Plos One, 7 (8): 10.1371.

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